diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt
index b617b72d7..370db60ec 100644
--- a/python/CMakeLists.txt
+++ b/python/CMakeLists.txt
@@ -1,18 +1,6 @@
 find_program(PYTHON "python")
 
 if (PYTHON)
-    set(SETUP_PY_IN "${CMAKE_CURRENT_SOURCE_DIR}/setup.py")
-    set(SETUP_PY    "${CMAKE_CURRENT_BINARY_DIR}/setup.py")
-    set(DEPS        "${CMAKE_CURRENT_SOURCE_DIR}/pyatidlas/__init__.py")
-    set(OUTPUT      "${CMAKE_CURRENT_BINARY_DIR}/build/timestamp")
-
-    configure_file(${SETUP_PY_IN} ${SETUP_PY})
-
-    add_custom_command(OUTPUT ${OUTPUT}
-                       COMMAND ${PYTHON} ${SETUP_PY} build
-                       COMMAND ${CMAKE_COMMAND} -E touch ${OUTPUT}
-                       DEPENDS ${DEPS})
-    add_custom_target(pyatidlas ALL DEPENDS ${OUTPUT})
-
-    install(CODE "execute_process(COMMAND ${PYTHON} ${SETUP_PY} install)")
+  add_subdirectory(pyatidlas)
+  add_subdirectory(autotune)
 endif()
diff --git a/python/autotune/CMakeLists.txt b/python/autotune/CMakeLists.txt
new file mode 100644
index 000000000..75e03b3fa
--- /dev/null
+++ b/python/autotune/CMakeLists.txt
@@ -0,0 +1,13 @@
+set(SETUP_PY_IN "${CMAKE_CURRENT_SOURCE_DIR}/setup.py")
+set(SETUP_PY    "${CMAKE_CURRENT_BINARY_DIR}/setup.py")
+set(OUTPUT      "${CMAKE_CURRENT_BINARY_DIR}/build/timestamp")
+file(GLOB DEPS RELATIVE "${CMAKE_CURRENT_SOURCE_DIR}" "${CMAKE_CURRENT_SOURCE_DIR}/pysrc/*.py")
+LIST(APPEND DEPS "${CMAKE_CURRENT_SOURCE_DIR}/setup.py")
+
+configure_file(${SETUP_PY_IN} ${SETUP_PY})
+add_custom_command(OUTPUT ${OUTPUT}
+                   COMMAND ${PYTHON} ${SETUP_PY} build
+                   COMMAND ${CMAKE_COMMAND} -E touch ${OUTPUT}
+                   DEPENDS ${DEPS})
+add_custom_target(autotune ALL DEPENDS ${OUTPUT})
+install(CODE "execute_process(COMMAND ${PYTHON} ${SETUP_PY} install)")
diff --git a/python/config.ini b/python/autotune/external/config.ini
similarity index 100%
rename from python/config.ini
rename to python/autotune/external/config.ini
diff --git a/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/PKG-INFO b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/PKG-INFO
new file mode 100644
index 000000000..8a4c5200a
--- /dev/null
+++ b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/PKG-INFO
@@ -0,0 +1,74 @@
+Metadata-Version: 1.1
+Name: pyopencl
+Version: 2014.1
+Summary: Python wrapper for OpenCL
+Home-page: http://mathema.tician.de/software/pyopencl
+Author: Andreas Kloeckner
+Author-email: inform@tiker.net
+License: MIT
+Description: PyOpenCL lets you access GPUs and other massively parallel compute
+        devices from Python. It tries to offer computing goodness in the
+        spirit of its sister project `PyCUDA <http://mathema.tician.de/software/pycuda>`_:
+        
+        * Object cleanup tied to lifetime of objects. This idiom, often
+          called
+          `RAII <http://en.wikipedia.org/wiki/Resource_Acquisition_Is_Initialization>`_
+          in C++, makes it much easier to write correct, leak- and
+          crash-free code.
+        
+        * Completeness. PyOpenCL puts the full power of OpenCL's API at
+          your disposal, if you wish.  Every obscure `get_info()` query and 
+          all CL calls are accessible.
+        
+        * Automatic Error Checking. All CL errors are automatically
+          translated into Python exceptions.
+        
+        * Speed. PyOpenCL's base layer is written in C++, so all the niceties
+          above are virtually free.
+        
+        * Helpful and complete `Documentation <http://documen.tician.de/pyopencl>`_
+          as well as a `Wiki <http://wiki.tiker.net/PyOpenCL>`_.
+        
+        * Liberal license. PyOpenCL is open-source under the 
+          `MIT license <http://en.wikipedia.org/wiki/MIT_License>`_
+          and free for commercial, academic, and private use.
+        
+        * Broad support. PyOpenCL was tested and works with Apple's, AMD's, and Nvidia's 
+          CL implementations.
+        
+        To use PyOpenCL, you just need `numpy <http://numpy.org>`_ and an OpenCL
+        implementation.
+        (See this `howto <http://wiki.tiker.net/OpenCLHowTo>`_ for how to get one.)
+        
+        Places on the web related to PyOpenCL:
+        
+        * `Python package index <http://pypi.python.org/pypi/pyopencl>`_ (download releases)
+        
+          .. image:: https://badge.fury.io/py/pyopencl.png
+              :target: http://pypi.python.org/pypi/pyopencl
+        * `C. Gohlke's Windows binaries <http://www.lfd.uci.edu/~gohlke/pythonlibs/#pyopencl>`_ (download Windows binaries)
+        * `Github <http://github.com/pyopencl/pyopencl>`_ (get latest source code, file bugs)
+        * `Documentation <http://documen.tician.de/pyopencl>`_ (read how things work)
+        * `Wiki <http://wiki.tiker.net/PyOpenCL>`_ (read installation tips, get examples, read FAQ)
+        
+Platform: UNKNOWN
+Classifier: Environment :: Console
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Other Audience
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Natural Language :: English
+Classifier: Programming Language :: C++
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 2
+Classifier: Programming Language :: Python :: 2.4
+Classifier: Programming Language :: Python :: 2.5
+Classifier: Programming Language :: Python :: 2.6
+Classifier: Programming Language :: Python :: 2.7
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.2
+Classifier: Programming Language :: Python :: 3.3
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Scientific/Engineering :: Mathematics
+Classifier: Topic :: Scientific/Engineering :: Physics
diff --git a/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/SOURCES.txt b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/SOURCES.txt
new file mode 100644
index 000000000..8c4662c88
--- /dev/null
+++ b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/SOURCES.txt
@@ -0,0 +1,1971 @@
+MANIFEST.in
+Makefile.in
+README.rst
+README_SETUP.txt
+aksetup_helper.py
+configure.py
+setup.cfg
+setup.py
+bpl-subset/bpl_subset/boost/aligned_storage.hpp
+bpl-subset/bpl_subset/boost/array.hpp
+bpl-subset/bpl_subset/boost/assert.hpp
+bpl-subset/bpl_subset/boost/bind.hpp
+bpl-subset/bpl_subset/boost/call_traits.hpp
+bpl-subset/bpl_subset/boost/cast.hpp
+bpl-subset/bpl_subset/boost/cerrno.hpp
+bpl-subset/bpl_subset/boost/checked_delete.hpp
+bpl-subset/bpl_subset/boost/circular_buffer.hpp
+bpl-subset/bpl_subset/boost/circular_buffer_fwd.hpp
+bpl-subset/bpl_subset/boost/compressed_pair.hpp
+bpl-subset/bpl_subset/boost/concept_archetype.hpp
+bpl-subset/bpl_subset/boost/concept_check.hpp
+bpl-subset/bpl_subset/boost/config.hpp
+bpl-subset/bpl_subset/boost/cstdint.hpp
+bpl-subset/bpl_subset/boost/cstdlib.hpp
+bpl-subset/bpl_subset/boost/current_function.hpp
+bpl-subset/bpl_subset/boost/date_time.hpp
+bpl-subset/bpl_subset/boost/dynamic_bitset.hpp
+bpl-subset/bpl_subset/boost/dynamic_bitset_fwd.hpp
+bpl-subset/bpl_subset/boost/enable_shared_from_this.hpp
+bpl-subset/bpl_subset/boost/exception_ptr.hpp
+bpl-subset/bpl_subset/boost/foreach.hpp
+bpl-subset/bpl_subset/boost/foreach_fwd.hpp
+bpl-subset/bpl_subset/boost/format.hpp
+bpl-subset/bpl_subset/boost/function.hpp
+bpl-subset/bpl_subset/boost/function_equal.hpp
+bpl-subset/bpl_subset/boost/get_pointer.hpp
+bpl-subset/bpl_subset/boost/implicit_cast.hpp
+bpl-subset/bpl_subset/boost/indirect_reference.hpp
+bpl-subset/bpl_subset/boost/integer.hpp
+bpl-subset/bpl_subset/boost/integer_fwd.hpp
+bpl-subset/bpl_subset/boost/integer_traits.hpp
+bpl-subset/bpl_subset/boost/intrusive_ptr.hpp
+bpl-subset/bpl_subset/boost/io_fwd.hpp
+bpl-subset/bpl_subset/boost/is_placeholder.hpp
+bpl-subset/bpl_subset/boost/iterator.hpp
+bpl-subset/bpl_subset/boost/lexical_cast.hpp
+bpl-subset/bpl_subset/boost/limits.hpp
+bpl-subset/bpl_subset/boost/make_shared.hpp
+bpl-subset/bpl_subset/boost/math_fwd.hpp
+bpl-subset/bpl_subset/boost/mem_fn.hpp
+bpl-subset/bpl_subset/boost/memory_order.hpp
+bpl-subset/bpl_subset/boost/mpi.hpp
+bpl-subset/bpl_subset/boost/multi_index_container.hpp
+bpl-subset/bpl_subset/boost/multi_index_container_fwd.hpp
+bpl-subset/bpl_subset/boost/next_prior.hpp
+bpl-subset/bpl_subset/boost/non_type.hpp
+bpl-subset/bpl_subset/boost/noncopyable.hpp
+bpl-subset/bpl_subset/boost/none.hpp
+bpl-subset/bpl_subset/boost/none_t.hpp
+bpl-subset/bpl_subset/boost/operators.hpp
+bpl-subset/bpl_subset/boost/optional.hpp
+bpl-subset/bpl_subset/boost/pointee.hpp
+bpl-subset/bpl_subset/boost/pointer_to_other.hpp
+bpl-subset/bpl_subset/boost/preprocessor.hpp
+bpl-subset/bpl_subset/boost/progress.hpp
+bpl-subset/bpl_subset/boost/python.hpp
+bpl-subset/bpl_subset/boost/rational.hpp
+bpl-subset/bpl_subset/boost/ref.hpp
+bpl-subset/bpl_subset/boost/scoped_array.hpp
+bpl-subset/bpl_subset/boost/scoped_ptr.hpp
+bpl-subset/bpl_subset/boost/shared_array.hpp
+bpl-subset/bpl_subset/boost/shared_ptr.hpp
+bpl-subset/bpl_subset/boost/smart_ptr.hpp
+bpl-subset/bpl_subset/boost/static_assert.hpp
+bpl-subset/bpl_subset/boost/swap.hpp
+bpl-subset/bpl_subset/boost/thread.hpp
+bpl-subset/bpl_subset/boost/throw_exception.hpp
+bpl-subset/bpl_subset/boost/timer.hpp
+bpl-subset/bpl_subset/boost/token_functions.hpp
+bpl-subset/bpl_subset/boost/token_iterator.hpp
+bpl-subset/bpl_subset/boost/tokenizer.hpp
+bpl-subset/bpl_subset/boost/type.hpp
+bpl-subset/bpl_subset/boost/type_traits.hpp
+bpl-subset/bpl_subset/boost/unordered_map.hpp
+bpl-subset/bpl_subset/boost/unordered_set.hpp
+bpl-subset/bpl_subset/boost/utility.hpp
+bpl-subset/bpl_subset/boost/version.hpp
+bpl-subset/bpl_subset/boost/visit_each.hpp
+bpl-subset/bpl_subset/boost/weak_ptr.hpp
+bpl-subset/bpl_subset/boost/bind/arg.hpp
+bpl-subset/bpl_subset/boost/bind/bind.hpp
+bpl-subset/bpl_subset/boost/bind/bind_cc.hpp
+bpl-subset/bpl_subset/boost/bind/bind_mf2_cc.hpp
+bpl-subset/bpl_subset/boost/bind/bind_mf_cc.hpp
+bpl-subset/bpl_subset/boost/bind/bind_template.hpp
+bpl-subset/bpl_subset/boost/bind/mem_fn.hpp
+bpl-subset/bpl_subset/boost/bind/mem_fn_cc.hpp
+bpl-subset/bpl_subset/boost/bind/mem_fn_template.hpp
+bpl-subset/bpl_subset/boost/bind/mem_fn_vw.hpp
+bpl-subset/bpl_subset/boost/bind/placeholders.hpp
+bpl-subset/bpl_subset/boost/bind/protect.hpp
+bpl-subset/bpl_subset/boost/bind/storage.hpp
+bpl-subset/bpl_subset/boost/concept/assert.hpp
+bpl-subset/bpl_subset/boost/concept/usage.hpp
+bpl-subset/bpl_subset/boost/concept/detail/backward_compatibility.hpp
+bpl-subset/bpl_subset/boost/concept/detail/borland.hpp
+bpl-subset/bpl_subset/boost/concept/detail/concept_def.hpp
+bpl-subset/bpl_subset/boost/concept/detail/concept_undef.hpp
+bpl-subset/bpl_subset/boost/concept/detail/general.hpp
+bpl-subset/bpl_subset/boost/concept/detail/has_constraints.hpp
+bpl-subset/bpl_subset/boost/concept/detail/msvc.hpp
+bpl-subset/bpl_subset/boost/config/abi_prefix.hpp
+bpl-subset/bpl_subset/boost/config/abi_suffix.hpp
+bpl-subset/bpl_subset/boost/config/auto_link.hpp
+bpl-subset/bpl_subset/boost/config/posix_features.hpp
+bpl-subset/bpl_subset/boost/config/requires_threads.hpp
+bpl-subset/bpl_subset/boost/config/select_compiler_config.hpp
+bpl-subset/bpl_subset/boost/config/select_platform_config.hpp
+bpl-subset/bpl_subset/boost/config/select_stdlib_config.hpp
+bpl-subset/bpl_subset/boost/config/suffix.hpp
+bpl-subset/bpl_subset/boost/config/user.hpp
+bpl-subset/bpl_subset/boost/config/warning_disable.hpp
+bpl-subset/bpl_subset/boost/config/abi/borland_prefix.hpp
+bpl-subset/bpl_subset/boost/config/abi/borland_suffix.hpp
+bpl-subset/bpl_subset/boost/config/abi/msvc_prefix.hpp
+bpl-subset/bpl_subset/boost/config/abi/msvc_suffix.hpp
+bpl-subset/bpl_subset/boost/config/compiler/borland.hpp
+bpl-subset/bpl_subset/boost/config/compiler/clang.hpp
+bpl-subset/bpl_subset/boost/config/compiler/codegear.hpp
+bpl-subset/bpl_subset/boost/config/compiler/comeau.hpp
+bpl-subset/bpl_subset/boost/config/compiler/common_edg.hpp
+bpl-subset/bpl_subset/boost/config/compiler/compaq_cxx.hpp
+bpl-subset/bpl_subset/boost/config/compiler/cray.hpp
+bpl-subset/bpl_subset/boost/config/compiler/digitalmars.hpp
+bpl-subset/bpl_subset/boost/config/compiler/gcc.hpp
+bpl-subset/bpl_subset/boost/config/compiler/gcc_xml.hpp
+bpl-subset/bpl_subset/boost/config/compiler/greenhills.hpp
+bpl-subset/bpl_subset/boost/config/compiler/hp_acc.hpp
+bpl-subset/bpl_subset/boost/config/compiler/intel.hpp
+bpl-subset/bpl_subset/boost/config/compiler/kai.hpp
+bpl-subset/bpl_subset/boost/config/compiler/metrowerks.hpp
+bpl-subset/bpl_subset/boost/config/compiler/mpw.hpp
+bpl-subset/bpl_subset/boost/config/compiler/nvcc.hpp
+bpl-subset/bpl_subset/boost/config/compiler/pathscale.hpp
+bpl-subset/bpl_subset/boost/config/compiler/pgi.hpp
+bpl-subset/bpl_subset/boost/config/compiler/sgi_mipspro.hpp
+bpl-subset/bpl_subset/boost/config/compiler/sunpro_cc.hpp
+bpl-subset/bpl_subset/boost/config/compiler/vacpp.hpp
+bpl-subset/bpl_subset/boost/config/compiler/visualc.hpp
+bpl-subset/bpl_subset/boost/config/no_tr1/cmath.hpp
+bpl-subset/bpl_subset/boost/config/no_tr1/complex.hpp
+bpl-subset/bpl_subset/boost/config/no_tr1/functional.hpp
+bpl-subset/bpl_subset/boost/config/no_tr1/memory.hpp
+bpl-subset/bpl_subset/boost/config/no_tr1/utility.hpp
+bpl-subset/bpl_subset/boost/config/platform/aix.hpp
+bpl-subset/bpl_subset/boost/config/platform/amigaos.hpp
+bpl-subset/bpl_subset/boost/config/platform/beos.hpp
+bpl-subset/bpl_subset/boost/config/platform/bsd.hpp
+bpl-subset/bpl_subset/boost/config/platform/cray.hpp
+bpl-subset/bpl_subset/boost/config/platform/cygwin.hpp
+bpl-subset/bpl_subset/boost/config/platform/hpux.hpp
+bpl-subset/bpl_subset/boost/config/platform/irix.hpp
+bpl-subset/bpl_subset/boost/config/platform/linux.hpp
+bpl-subset/bpl_subset/boost/config/platform/macos.hpp
+bpl-subset/bpl_subset/boost/config/platform/qnxnto.hpp
+bpl-subset/bpl_subset/boost/config/platform/solaris.hpp
+bpl-subset/bpl_subset/boost/config/platform/symbian.hpp
+bpl-subset/bpl_subset/boost/config/platform/vms.hpp
+bpl-subset/bpl_subset/boost/config/platform/vxworks.hpp
+bpl-subset/bpl_subset/boost/config/platform/win32.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/dinkumware.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/libcomo.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/libcpp.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/libstdcpp3.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/modena.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/msl.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/roguewave.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/sgi.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/stlport.hpp
+bpl-subset/bpl_subset/boost/config/stdlib/vacpp.hpp
+bpl-subset/bpl_subset/boost/container/allocator_traits.hpp
+bpl-subset/bpl_subset/boost/container/container_fwd.hpp
+bpl-subset/bpl_subset/boost/container/list.hpp
+bpl-subset/bpl_subset/boost/container/scoped_allocator.hpp
+bpl-subset/bpl_subset/boost/container/scoped_allocator_fwd.hpp
+bpl-subset/bpl_subset/boost/container/vector.hpp
+bpl-subset/bpl_subset/boost/container/detail/advanced_insert_int.hpp
+bpl-subset/bpl_subset/boost/container/detail/algorithms.hpp
+bpl-subset/bpl_subset/boost/container/detail/allocation_type.hpp
+bpl-subset/bpl_subset/boost/container/detail/config_begin.hpp
+bpl-subset/bpl_subset/boost/container/detail/config_end.hpp
+bpl-subset/bpl_subset/boost/container/detail/destroyers.hpp
+bpl-subset/bpl_subset/boost/container/detail/iterators.hpp
+bpl-subset/bpl_subset/boost/container/detail/memory_util.hpp
+bpl-subset/bpl_subset/boost/container/detail/mpl.hpp
+bpl-subset/bpl_subset/boost/container/detail/node_alloc_holder.hpp
+bpl-subset/bpl_subset/boost/container/detail/pair.hpp
+bpl-subset/bpl_subset/boost/container/detail/preprocessor.hpp
+bpl-subset/bpl_subset/boost/container/detail/type_traits.hpp
+bpl-subset/bpl_subset/boost/container/detail/utilities.hpp
+bpl-subset/bpl_subset/boost/container/detail/value_init.hpp
+bpl-subset/bpl_subset/boost/container/detail/variadic_templates_tools.hpp
+bpl-subset/bpl_subset/boost/container/detail/version_type.hpp
+bpl-subset/bpl_subset/boost/container/detail/workaround.hpp
+bpl-subset/bpl_subset/boost/date_time/adjust_functors.hpp
+bpl-subset/bpl_subset/boost/date_time/c_time.hpp
+bpl-subset/bpl_subset/boost/date_time/compiler_config.hpp
+bpl-subset/bpl_subset/boost/date_time/constrained_value.hpp
+bpl-subset/bpl_subset/boost/date_time/date.hpp
+bpl-subset/bpl_subset/boost/date_time/date_clock_device.hpp
+bpl-subset/bpl_subset/boost/date_time/date_defs.hpp
+bpl-subset/bpl_subset/boost/date_time/date_duration.hpp
+bpl-subset/bpl_subset/boost/date_time/date_duration_types.hpp
+bpl-subset/bpl_subset/boost/date_time/date_facet.hpp
+bpl-subset/bpl_subset/boost/date_time/date_format_simple.hpp
+bpl-subset/bpl_subset/boost/date_time/date_formatting.hpp
+bpl-subset/bpl_subset/boost/date_time/date_formatting_limited.hpp
+bpl-subset/bpl_subset/boost/date_time/date_formatting_locales.hpp
+bpl-subset/bpl_subset/boost/date_time/date_generator_formatter.hpp
+bpl-subset/bpl_subset/boost/date_time/date_generator_parser.hpp
+bpl-subset/bpl_subset/boost/date_time/date_generators.hpp
+bpl-subset/bpl_subset/boost/date_time/date_iterator.hpp
+bpl-subset/bpl_subset/boost/date_time/date_names_put.hpp
+bpl-subset/bpl_subset/boost/date_time/date_parsing.hpp
+bpl-subset/bpl_subset/boost/date_time/dst_rules.hpp
+bpl-subset/bpl_subset/boost/date_time/dst_transition_generators.hpp
+bpl-subset/bpl_subset/boost/date_time/filetime_functions.hpp
+bpl-subset/bpl_subset/boost/date_time/format_date_parser.hpp
+bpl-subset/bpl_subset/boost/date_time/gregorian_calendar.hpp
+bpl-subset/bpl_subset/boost/date_time/gregorian_calendar.ipp
+bpl-subset/bpl_subset/boost/date_time/int_adapter.hpp
+bpl-subset/bpl_subset/boost/date_time/iso_format.hpp
+bpl-subset/bpl_subset/boost/date_time/locale_config.hpp
+bpl-subset/bpl_subset/boost/date_time/microsec_time_clock.hpp
+bpl-subset/bpl_subset/boost/date_time/parse_format_base.hpp
+bpl-subset/bpl_subset/boost/date_time/period.hpp
+bpl-subset/bpl_subset/boost/date_time/period_formatter.hpp
+bpl-subset/bpl_subset/boost/date_time/period_parser.hpp
+bpl-subset/bpl_subset/boost/date_time/special_defs.hpp
+bpl-subset/bpl_subset/boost/date_time/special_values_formatter.hpp
+bpl-subset/bpl_subset/boost/date_time/special_values_parser.hpp
+bpl-subset/bpl_subset/boost/date_time/string_convert.hpp
+bpl-subset/bpl_subset/boost/date_time/string_parse_tree.hpp
+bpl-subset/bpl_subset/boost/date_time/strings_from_facet.hpp
+bpl-subset/bpl_subset/boost/date_time/time.hpp
+bpl-subset/bpl_subset/boost/date_time/time_clock.hpp
+bpl-subset/bpl_subset/boost/date_time/time_defs.hpp
+bpl-subset/bpl_subset/boost/date_time/time_duration.hpp
+bpl-subset/bpl_subset/boost/date_time/time_facet.hpp
+bpl-subset/bpl_subset/boost/date_time/time_formatting_streams.hpp
+bpl-subset/bpl_subset/boost/date_time/time_iterator.hpp
+bpl-subset/bpl_subset/boost/date_time/time_parsing.hpp
+bpl-subset/bpl_subset/boost/date_time/time_resolution_traits.hpp
+bpl-subset/bpl_subset/boost/date_time/time_system_counted.hpp
+bpl-subset/bpl_subset/boost/date_time/time_system_split.hpp
+bpl-subset/bpl_subset/boost/date_time/time_zone_base.hpp
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+bpl-subset/bpl_subset/boost/date_time/tz_db_base.hpp
+bpl-subset/bpl_subset/boost/date_time/wrapping_int.hpp
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+bpl-subset/bpl_subset/boost/date_time/gregorian/conversion.hpp
+bpl-subset/bpl_subset/boost/date_time/gregorian/formatters.hpp
+bpl-subset/bpl_subset/boost/date_time/gregorian/formatters_limited.hpp
+bpl-subset/bpl_subset/boost/date_time/gregorian/greg_calendar.hpp
+bpl-subset/bpl_subset/boost/date_time/gregorian/greg_date.hpp
+bpl-subset/bpl_subset/boost/date_time/gregorian/greg_day.hpp
+bpl-subset/bpl_subset/boost/date_time/gregorian/greg_day_of_year.hpp
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+bpl-subset/bpl_subset/libs/python/src/object/stl_iterator.cpp
+bpl-subset/bpl_subset/libs/smart_ptr/src/sp_collector.cpp
+bpl-subset/bpl_subset/libs/smart_ptr/src/sp_debug_hooks.cpp
+bpl-subset/bpl_subset/libs/system/src/error_code.cpp
+bpl-subset/bpl_subset/libs/system/src/local_free_on_destruction.hpp
+bpl-subset/bpl_subset/libs/thread/index.html
+bpl-subset/bpl_subset/libs/thread/src/future.cpp
+bpl-subset/bpl_subset/libs/thread/src/tss_null.cpp
+bpl-subset/bpl_subset/libs/thread/src/pthread/once.cpp
+bpl-subset/bpl_subset/libs/thread/src/pthread/thread.cpp
+bpl-subset/bpl_subset/libs/thread/src/pthread/timeconv.inl
+bpl-subset/bpl_subset/libs/thread/src/win32/thread.cpp
+bpl-subset/bpl_subset/libs/thread/src/win32/timeconv.inl
+bpl-subset/bpl_subset/libs/thread/src/win32/tss_dll.cpp
+bpl-subset/bpl_subset/libs/thread/src/win32/tss_pe.cpp
+contrib/pyopencl.vim
+contrib/fortran-to-opencl/README
+contrib/fortran-to-opencl/translate.py
+doc/Makefile
+doc/conf.py
+doc/make_constants.py
+examples/benchmark.py
+examples/demo-struct-reduce.py
+examples/demo.py
+examples/demo_array.py
+examples/demo_elementwise.py
+examples/demo_elementwise_complex.py
+examples/demo_mandelbrot.py
+examples/demo_meta_codepy.py
+examples/demo_meta_template.py
+examples/download-examples-from-wiki.py
+examples/dump-performance.py
+examples/dump-properties.py
+examples/gl_interop_demo.py
+examples/gl_particle_animation.py
+examples/ipython-demo.ipynb
+examples/narray.py
+examples/transpose.py
+pyopencl/__init__.py
+pyopencl/_cluda.py
+pyopencl/_mymako.py
+pyopencl/algorithm.py
+pyopencl/array.py
+pyopencl/cache.py
+pyopencl/capture_call.py
+pyopencl/clmath.py
+pyopencl/clrandom.py
+pyopencl/elementwise.py
+pyopencl/ipython.py
+pyopencl/reduction.py
+pyopencl/scan.py
+pyopencl/tools.py
+pyopencl/version.py
+pyopencl.egg-info/PKG-INFO
+pyopencl.egg-info/SOURCES.txt
+pyopencl.egg-info/dependency_links.txt
+pyopencl.egg-info/not-zip-safe
+pyopencl.egg-info/requires.txt
+pyopencl.egg-info/top_level.txt
+pyopencl/characterize/__init__.py
+pyopencl/characterize/performance.py
+pyopencl/cl/pyopencl-airy.cl
+pyopencl/cl/pyopencl-bessel-j.cl
+pyopencl/cl/pyopencl-bessel-y.cl
+pyopencl/cl/pyopencl-complex.h
+pyopencl/cl/pyopencl-eval-tbl.cl
+pyopencl/cl/pyopencl-ranluxcl.cl
+pyopencl/compyte/__init__.py
+pyopencl/compyte/array.py
+pyopencl/compyte/dtypes.py
+src/wrapper/_pvt_struct_v2.cpp
+src/wrapper/_pvt_struct_v3.cpp
+src/wrapper/bitlog.cpp
+src/wrapper/bitlog.hpp
+src/wrapper/mempool.hpp
+src/wrapper/numpy_init.hpp
+src/wrapper/tools.hpp
+src/wrapper/wrap_cl.cpp
+src/wrapper/wrap_cl.hpp
+src/wrapper/wrap_cl_part_1.cpp
+src/wrapper/wrap_cl_part_2.cpp
+src/wrapper/wrap_constants.cpp
+src/wrapper/wrap_helpers.hpp
+src/wrapper/wrap_mempool.cpp
+test/empty-header.h
+test/test_algorithm.py
+test/test_array.py
+test/test_clmath.py
+test/test_wrapper.py
\ No newline at end of file
diff --git a/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/dependency_links.txt b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/dependency_links.txt
new file mode 100644
index 000000000..8b1378917
--- /dev/null
+++ b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/dependency_links.txt
@@ -0,0 +1 @@
+
diff --git a/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/installed-files.txt b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/installed-files.txt
new file mode 100644
index 000000000..6ea0d3914
--- /dev/null
+++ b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/installed-files.txt
@@ -0,0 +1,55 @@
+../pyopencl/_mymako.py
+../pyopencl/array.py
+../pyopencl/algorithm.py
+../pyopencl/version.py
+../pyopencl/cache.py
+../pyopencl/clrandom.py
+../pyopencl/reduction.py
+../pyopencl/ipython.py
+../pyopencl/_cluda.py
+../pyopencl/__init__.py
+../pyopencl/scan.py
+../pyopencl/capture_call.py
+../pyopencl/tools.py
+../pyopencl/clmath.py
+../pyopencl/elementwise.py
+../pyopencl/characterize/performance.py
+../pyopencl/characterize/__init__.py
+../pyopencl/compyte/dtypes.py
+../pyopencl/compyte/array.py
+../pyopencl/compyte/__init__.py
+../pyopencl/cl/pyopencl-ranluxcl.cl
+../pyopencl/cl/pyopencl-airy.cl
+../pyopencl/cl/pyopencl-eval-tbl.cl
+../pyopencl/cl/pyopencl-bessel-y.cl
+../pyopencl/cl/pyopencl-bessel-j.cl
+../pyopencl/cl/pyopencl-complex.h
+../pyopencl/_mymako.pyc
+../pyopencl/array.pyc
+../pyopencl/algorithm.pyc
+../pyopencl/version.pyc
+../pyopencl/cache.pyc
+../pyopencl/clrandom.pyc
+../pyopencl/reduction.pyc
+../pyopencl/ipython.pyc
+../pyopencl/_cluda.pyc
+../pyopencl/__init__.pyc
+../pyopencl/scan.pyc
+../pyopencl/capture_call.pyc
+../pyopencl/tools.pyc
+../pyopencl/clmath.pyc
+../pyopencl/elementwise.pyc
+../pyopencl/characterize/performance.pyc
+../pyopencl/characterize/__init__.pyc
+../pyopencl/compyte/dtypes.pyc
+../pyopencl/compyte/array.pyc
+../pyopencl/compyte/__init__.pyc
+../pyopencl/_cl.so
+../pyopencl/_pvt_struct.so
+./
+dependency_links.txt
+SOURCES.txt
+top_level.txt
+requires.txt
+not-zip-safe
+PKG-INFO
diff --git a/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/not-zip-safe b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/not-zip-safe
new file mode 100644
index 000000000..8b1378917
--- /dev/null
+++ b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/not-zip-safe
@@ -0,0 +1 @@
+
diff --git a/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/requires.txt b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/requires.txt
new file mode 100644
index 000000000..7af14cd9f
--- /dev/null
+++ b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/requires.txt
@@ -0,0 +1,3 @@
+pytools>=2014.2
+pytest>=2
+decorator>=3.2.0
diff --git a/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/top_level.txt b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/top_level.txt
new file mode 100644
index 000000000..771533ac1
--- /dev/null
+++ b/python/autotune/external/pyopencl-2014.1-py2.7.egg-info/top_level.txt
@@ -0,0 +1,3 @@
+_cl
+_pvt_struct
+pyopencl
diff --git a/python/autotune/autotune.py b/python/autotune/pysrc/autotune.py
similarity index 96%
rename from python/autotune/autotune.py
rename to python/autotune/pysrc/autotune.py
index 3c44619e9..31455f912 100644
--- a/python/autotune/autotune.py
+++ b/python/autotune/pysrc/autotune.py
@@ -1,16 +1,12 @@
 from __future__ import division
 
-import argparse
-import itertools
-import os
+import argparse, itertools, os, sys
+import misc_tools, optimize
 
 import pyopencl as cl
 import pyviennacl as vcl
 import pyatidlas as atd
 
-import tools
-import optimize
-import sys
 
 from configobj import ConfigObj
 from numpy import random
@@ -73,7 +69,7 @@ def do_tuning(config_fname, viennacl_root):
                     with vcl.Statement(node) as statement:
                         if parameters:
                             TemplateType = TYPES[operation]['template']
-                            return tools.benchmark(TemplateType(TemplateType.Parameters(*parameters),*other_params), statement, device)
+                            return misc_tools.benchmark(TemplateType(TemplateType.Parameters(*parameters),*other_params), statement, device)
                         print('-----')
                         print(' '.join(map(str, ("Now tuning:", datatype.__name__, '-', operation, '-'.join(other_params), '[' + device.name, '(' + device.platform.name + ')] for sizes', sizes))))
                         with open(fname, "w+") as archive:
@@ -84,7 +80,7 @@ def do_tuning(config_fname, viennacl_root):
                     if 'size' in p:
                         profile = execution_handler(map_to_list(int, p['size']))
                         if 'viennacl-src-root' in config:
-                            tools.update_viennacl_headers(config['viennacl-src-root'],device,datatype,operation,additional_parameters,profile)
+                            misc_tools.update_viennacl_headers(config['viennacl-src-root'],device,datatype,operation,additional_parameters,profile)
                     else:
                         def compute_perf(x, t):
                             return TYPES[operation]['perf-index']([datatype().itemsize, x, t])
diff --git a/python/autotune/dataset.py b/python/autotune/pysrc/dataset.py
similarity index 100%
rename from python/autotune/dataset.py
rename to python/autotune/pysrc/dataset.py
diff --git a/python/autotune/genetic.py b/python/autotune/pysrc/genetic.py
similarity index 95%
rename from python/autotune/genetic.py
rename to python/autotune/pysrc/genetic.py
index 85c7dd175..9d717189e 100644
--- a/python/autotune/genetic.py
+++ b/python/autotune/pysrc/genetic.py
@@ -1,8 +1,5 @@
-import random
-import time
-import sys
-import tools
-import copy
+import random, time, sys, copy
+import misc_tools
 
 import numpy as np
 import pyatidlas as atd
@@ -101,8 +98,8 @@ class GeneticOperators(object):
                 registers_usage = template.registers_usage(vcl.pycore.StatementsTuple(self.statement))/4
                 lmem_usage = template.lmem_usage(vcl.pycore.StatementsTuple(self.statement))
                 local_size = template.parameters.local_size_0*template.parameters.local_size_1
-                occupancy_record = tools.OccupancyRecord(self.device, local_size, lmem_usage, registers_usage)
-                if not tools.skip(template, self.statement, self.device):
+                occupancy_record = misc_tools.OccupancyRecord(self.device, local_size, lmem_usage, registers_usage)
+                if not misc_tools.skip(template, self.statement, self.device):
                     result.append(creator.Individual(bincode))
                     break
         return result
@@ -119,7 +116,7 @@ class GeneticOperators(object):
             parameters = self.decode(new_individual)
             template = self.build_template(self.TemplateType.Parameters(*parameters))
             #print tools.skip(template, self.statement, self.device), parameters
-            if not tools.skip(template, self.statement, self.device):
+            if not misc_tools.skip(template, self.statement, self.device):
                 break
         return new_individual,
 
@@ -128,7 +125,7 @@ class GeneticOperators(object):
             parameters = self.decode(individual)
             template = self.build_template(self.TemplateType.Parameters(*parameters))
             try:
-                tt = tools.benchmark(template, self.statement, self.device)
+                tt = misc_tools.benchmark(template, self.statement, self.device)
                 self.out.write(','.join([str(tt)]+map(str,map(int,parameters)))+'\n')
                 self.cache[tuple(individual)] = tt
             except:
diff --git a/python/autotune/tools.py b/python/autotune/pysrc/misc_tools.py
similarity index 100%
rename from python/autotune/tools.py
rename to python/autotune/pysrc/misc_tools.py
diff --git a/python/autotune/model.py b/python/autotune/pysrc/model.py
similarity index 100%
rename from python/autotune/model.py
rename to python/autotune/pysrc/model.py
diff --git a/python/autotune/optimize.py b/python/autotune/pysrc/optimize.py
similarity index 96%
rename from python/autotune/optimize.py
rename to python/autotune/pysrc/optimize.py
index e0373aaa5..8df8aa438 100644
--- a/python/autotune/optimize.py
+++ b/python/autotune/pysrc/optimize.py
@@ -1,11 +1,6 @@
-import array
-import numpy as np
-import random
-import sys
-
-import itertools
-import tools
+import array, random, itertools
 import deap.tools
+import numpy as np
 
 from genetic import GeneticOperators
 
diff --git a/python/autotune/setup.py b/python/autotune/setup.py
new file mode 100644
index 000000000..abfd101c8
--- /dev/null
+++ b/python/autotune/setup.py
@@ -0,0 +1,33 @@
+import os
+import sys
+from setuptools import Extension, setup
+from cx_Freeze import setup, Executable
+
+def main():
+    sys.path.append('/home/philippe/Development/ATIDLAS/build/python/pyatidlas/build/lib.linux-x86_64-2.7/')
+    sys.path.append('/home/philippe/Development/pyviennacl-dev/build/lib.linux-x86_64-2.7/')
+    sys.path.append(os.path.join('${CMAKE_CURRENT_SOURCE_DIR}','pysrc'))
+    extdir = os.path.join('${CMAKE_CURRENT_SOURCE_DIR}','external')
+    
+    buildOptions = dict(packages = ['scipy.sparse.csgraph._validation',
+                                    'scipy.special._ufuncs_cxx',
+                                    'scipy.sparse.linalg.dsolve.umfpack',
+                                    'scipy.integrate.vode',
+                                    'scipy.integrate.lsoda',
+                                    'sklearn.utils.sparsetools._graph_validation',
+                                    'sklearn.utils.lgamma'],
+                        excludes = ['matplotlib'],
+                        bin_path_includes = ['/usr/lib/x86_64-linux-gnu/'],
+                        include_files = [(os.path.abspath(os.path.join(extdir, x)), x) for x in os.listdir(extdir)])
+    base = 'Console'
+    executables = [
+        Executable(os.path.join('${CMAKE_CURRENT_SOURCE_DIR}','pysrc','autotune.py'), base=base)
+    ]
+    setup(name='atidlas-tune',
+          version = '1.0',
+          description = 'Auto-tuner for ATIDLAS',
+          options = dict(build_exe = buildOptions),
+          executables = executables)
+
+if __name__ == "__main__":
+    main()
diff --git a/python/pyatidlas/CMakeLists.txt b/python/pyatidlas/CMakeLists.txt
new file mode 100644
index 000000000..bc2e06b23
--- /dev/null
+++ b/python/pyatidlas/CMakeLists.txt
@@ -0,0 +1,13 @@
+set(SETUP_PY_IN "${CMAKE_CURRENT_SOURCE_DIR}/setup.py")
+set(SETUP_PY    "${CMAKE_CURRENT_BINARY_DIR}/setup.py")
+set(OUTPUT      "${CMAKE_CURRENT_BINARY_DIR}/build/timestamp")
+file(GLOB DEPS RELATIVE "${CMAKE_CURRENT_SOURCE_DIR}" "${CMAKE_CURRENT_SOURCE_DIR}/pyatidlas/*.py")
+list(APPEND DEPS "${CMAKE_CURRENT_SOURCE_DIR}/setup.py")
+
+configure_file(${SETUP_PY_IN} ${SETUP_PY})
+add_custom_command(OUTPUT ${OUTPUT}
+                   COMMAND ${PYTHON} ${SETUP_PY} build
+                   COMMAND ${CMAKE_COMMAND} -E touch ${OUTPUT}
+                   DEPENDS ${DEPS})
+add_custom_target(pyatidlas ALL DEPENDS ${OUTPUT})
+install(CODE "execute_process(COMMAND ${PYTHON} ${SETUP_PY} install)")
diff --git a/python/pyatidlas/__init__.py b/python/pyatidlas/pyatidlas/__init__.py
similarity index 100%
rename from python/pyatidlas/__init__.py
rename to python/pyatidlas/pyatidlas/__init__.py
diff --git a/python/pyatidlas/pycore.py b/python/pyatidlas/pyatidlas/pycore.py
similarity index 100%
rename from python/pyatidlas/pycore.py
rename to python/pyatidlas/pyatidlas/pycore.py
diff --git a/python/setup.py b/python/pyatidlas/setup.py
similarity index 88%
rename from python/setup.py
rename to python/pyatidlas/setup.py
index 294ff0d4d..4e45ad41b 100644
--- a/python/setup.py
+++ b/python/pyatidlas/setup.py
@@ -40,8 +40,10 @@ def main():
     cvars = sysconfig.get_config_vars()
     cvars['OPT'] = "-DNDEBUG -O3 " + str.join(' ', remove_prefixes(cvars['OPT'].split(), ['-g', '-O', '-Wstrict-prototypes', '-DNDEBUG']))
     cvars["CFLAGS"] = cvars["BASECFLAGS"] + " " + cvars["OPT"]
-
-    DEFINES = [('VIENNACL_WITH_OPENCL',None), ('VIENNACL_WITH_OPENMP', None)]
+    cvars["LDFLAGS"] = '-Wl,--no-as-needed ' + cvars["LDFLAGS"]
+    
+    DEFINES = [('VIENNACL_WITH_OPENCL',None), ('VIENNACL_WITH_OPENMP', None),
+               ('boost','pyviennaclboost')]
     INCLUDE_DIRS = ['/home/philippe/Development/pyviennacl-dev/external/boost-python-ublas-subset/boost_subset/',
                     '${PROJECT_SOURCE_DIR}',
                     '/home/philippe/Development/pyviennacl-dev/external/viennacl-dev']
@@ -56,7 +58,7 @@ def main():
 		author_email='ptillet@g.harvard.edu',
 		classifiers=[
 		    'Environment :: Console',
-		    'Development Status :: 5 - Production/Stable',
+		    'Development Status :: 1 - Experimental',
 		    'Intended Audience :: Developers',
 		    'Intended Audience :: Other Audience',
 		    'Intended Audience :: Science/Research',
@@ -92,17 +94,5 @@ def main():
 		cmdclass={'build_ext': build_ext_subclass}
     )
 
-#from cx_Freeze import setup, Executable
-#buildOptions = dict(packages = [], excludes = ['matplotlib'])
-#base = 'Console'
-#executables = [
-#    Executable('autotune/autotune.py', base=base)
-#]
-#setup(name='atidlas-tune',
-#      version = '1.0',
-#      description = 'Auto-tuning facility for ATIDLAS',
-#      options = dict(build_exe = buildOptions),
-#      executables = executables)
-
 if __name__ == "__main__":
     main()
diff --git a/python/src/_atidlas.cpp b/python/pyatidlas/src/_atidlas.cpp
similarity index 100%
rename from python/src/_atidlas.cpp
rename to python/pyatidlas/src/_atidlas.cpp